Week 13 Update - Wrapping Up

This is the last week of Google Summer of Code. I am happy to share that we have met most of the goals outlined in our proposal. I am thankful to my mentor Dr. Matthias König for his guidance and supervision throughout the summer. I hope the NRNB community finds our project useful and I'll continue to be a part of the open-source world forever. 

An update on the current project status:
  1. GSoC final submission is due before September 12 (Monday). Work submission guidelines are here.
  2. We must move the complete code from the libsbml-notebook branch to the main branch.
  3. Github CI is failing. We need to sort it out.
  4. Combine archive created. Need review.
  5. LibOmexMeta - too complex; I think we can skip this.
  6. Hosting notebooks on google colab. Need review.
Pending code tasks:
  1. CellML: Code written, some minor issues to discuss: math equations, the syntax for public_interface, and connections between two components.
  2. SBOL: Waiting for response from Gonzalo.
  3. StandardCode StatusJupyter notebookValidation code
    SBMLYesYesYes
    CellMLYes
    SBGNYesYes
    SED-MLYesYes
    SBOL
    AntimonyYesYesYes
    BioPaxYesYesYes
    SBMLUtilsYesYesYes


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